HL_9QSJ_060
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GAAACAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_060 not in the Motif Atlas
- Homologous match to HL_7A0S_027
- Geometric discrepancy: 0.1947
- The information below is about HL_7A0S_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9QSJ|1|a|G|978
9QSJ|1|a|A|979
9QSJ|1|a|A|980
9QSJ|1|a|A|981
9QSJ|1|a|C|982
9QSJ|1|a|A|983
9QSJ|1|a|A|984
9QSJ|1|a|C|985
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain y
- Large ribosomal subunit protein uL30
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