HL_9QSJ_067

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9QSJ|1|a|C|1493, 9QSJ|1|a|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_067 not in the Motif Atlas

Homologous match to HL_7A0S_037

Geometric discrepancy: 0.4744

The information below is about HL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39243.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9QSJ|1|a|G|1492
9QSJ|1|a|C|1493
9QSJ|1|a|A|1494
9QSJ|1|a|A|1495
9QSJ|1|a|A|1496
9QSJ|1|a|U|1497
9QSJ|1|a|C|1498

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2