HL_9QSJ_071

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9QSJ|1|a|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_071 not in the Motif Atlas

Geometric match to HL_8B0X_069

Geometric discrepancy: 0.0418

The information below is about HL_8B0X_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9QSJ|1|a|A|1630
9QSJ|1|a|G|1631
9QSJ|1|a|A|1632
9QSJ|1|a|G|1633
9QSJ|1|a|A|1634
9QSJ|1|a|A|1635
9QSJ|1|a|U|1636

Current chains

Chain a

E. coli 23S rRNA

Nearby chains