HL_9QSJ_080
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GUG(6MZ)AGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 9QSJ|1|a|6MZ|2030, 9QSJ|1|a|A|2031, 9QSJ|1|a|G|2032
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_080 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.2041
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9QSJ|1|a|G|2027
9QSJ|1|a|U|2028
9QSJ|1|a|G|2029
9QSJ|1|a|6MZ|2030
9QSJ|1|a|A|2031
9QSJ|1|a|G|2032
9QSJ|1|a|A|2033
9QSJ|1|a|U|2034
9QSJ|1|a|G|2035
9QSJ|1|a|C|2036
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain z
- Large ribosomal subunit protein bL32
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