HL_9QSJ_084

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_084 not in the Motif Atlas

Geometric match to HL_8B0X_101

Geometric discrepancy: 0.0632

The information below is about HL_8B0X_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9QSJ|1|a|G|2304
9QSJ|1|a|U|2305
9QSJ|1|a|C|2306
9QSJ|1|a|G|2307
9QSJ|1|a|G|2308
9QSJ|1|a|A|2309
9QSJ|1|a|C|2310
9QSJ|1|a|A|2311
9QSJ|1|a|U|2312

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5