HL_9QSJ_091

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_091 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1688

The information below is about HL_7A0S_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9QSJ|1|a|C|2551
9QSJ|1|a|OMU|2552
9QSJ|1|a|G|2553
9QSJ|1|a|U|2554
9QSJ|1|a|U|2555
9QSJ|1|a|C|2556
9QSJ|1|a|G|2557

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA