HL_9QSJ_098

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_098 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.0939

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9QSJ|1|a|A|2856
9QSJ|1|a|G|2857
9QSJ|1|a|C|2858
9QSJ|1|a|G|2859
9QSJ|1|a|A|2860
9QSJ|1|a|U|2861

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein bL19