HL_9QWT_013

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

9QWT|1|A2|G|1005, 9QWT|1|A2|G|1010, 9QWT|1|A2|U|1011, 9QWT|1|A2|C|1013, 9QWT|1|A2|C|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|C|1004
9QWT|1|A2|G|1005
9QWT|1|A2|G|1006
9QWT|1|A2|A|1007
9QWT|1|A2|C|1008
9QWT|1|A2|U|1009
9QWT|1|A2|G|1010
9QWT|1|A2|U|1011
9QWT|1|A2|C|1012
9QWT|1|A2|C|1013
9QWT|1|A2|C|1014
9QWT|1|A2|C|1015
9QWT|1|A2|A|1016
9QWT|1|A2|G|1017
9QWT|1|A2|U|1018
9QWT|1|A2|G|1019
9QWT|1|A2|C|1020
9QWT|1|A2|G|1021

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Large ribosomal subunit protein uL16

Chain G2

Large ribosomal subunit protein uL18