HL_9R9P_017

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9R9P|1|C1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9P_017 not in the Motif Atlas

Homologous match to HL_9AXU_013

Geometric discrepancy: 0.0834

The information below is about HL_9AXU_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9R9P|1|C1|U|640
9R9P|1|C1|C|641
9R9P|1|C1|U|642
9R9P|1|C1|U|643
9R9P|1|C1|G|644
9R9P|1|C1|A|645
9R9P|1|C1|A|646
9R9P|1|C1|A|647
9R9P|1|C1|C|648
9R9P|1|C1|A|649

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L28

Chain Le

60S ribosomal protein L32