HL_9R9P_069

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9R9P|1|C2|U|158, 9R9P|1|C2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9P_069 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.2015

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9R9P|1|C2|G|154
9R9P|1|C2|U|155
9R9P|1|C2|A|156
9R9P|1|C2|A|157
9R9P|1|C2|U|158
9R9P|1|C2|U|159
9R9P|1|C2|C|160

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A