HL_9R9P_091

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

9R9P|1|C2|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9P_091 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.3891

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9R9P|1|C2|U|1396
9R9P|1|C2|U|1397
9R9P|1|C2|U|1398
9R9P|1|C2|C|1399
9R9P|1|C2|A|1400
9R9P|1|C2|A|1401
9R9P|1|C2|G|1402

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SR

40S ribosomal protein S17-B