HL_9R9P_092

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9P_092 not in the Motif Atlas

Homologous match to HL_9PN5_107

Geometric discrepancy: 0.1166

The information below is about HL_9PN5_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9R9P|1|C2|C|1501
9R9P|1|C2|G|1502
9R9P|1|C2|A|1503
9R9P|1|C2|G|1504
9R9P|1|C2|A|1505
9R9P|1|C2|G|1506

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A

Chain ST

40S ribosomal protein S19-A