HL_9RBF_007

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RBF_007 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1348

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9RBF|1|A|A|320
9RBF|1|A|A|321
9RBF|1|A|C|322
9RBF|1|A|U|323
9RBF|1|A|G|324
9RBF|1|A|A|325
9RBF|1|A|G|326
9RBF|1|A|A|327
9RBF|1|A|C|328
9RBF|1|A|A|329
9RBF|1|A|C|330
9RBF|1|A|G|331
9RBF|1|A|G|332
9RBF|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20