HL_9RBF_031

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UUCGGGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RBF_031 not in the Motif Atlas

Homologous match to HL_3FOZ_005

Geometric discrepancy: 0.5804

The information below is about HL_3FOZ_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9RBF|1|Y|U|33
9RBF|1|Y|U|34
9RBF|1|Y|C|35
9RBF|1|Y|G|36
9RBF|1|Y|G|37
9RBF|1|Y|G|38
9RBF|1|Y|A|39

Current chains

Chain Y

A-site tRNA-Pro

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain X

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA