HL_9RBF_035
3D structure
- PDB id
- 9RBF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RBF_035 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.1319
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9RBF|1|Z|G|54
9RBF|1|Z|U|55
9RBF|1|Z|U|56
9RBF|1|Z|C|57
9RBF|1|Z|G|58
9RBF|1|Z|A|59
9RBF|1|Z|A|60
9RBF|1|Z|U|61
9RBF|1|Z|C|62
Current chains
- Chain Z
- P-site tRNA-Pro
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- 50S ribosomal protein L16
Coloring options: