HL_9RBF_047

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9RBF|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RBF_047 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3388

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9RBF|1|a|A|382
9RBF|1|a|C|383
9RBF|1|a|A|384
9RBF|1|a|C|385
9RBF|1|a|G|386
9RBF|1|a|U|387
9RBF|1|a|G|388
9RBF|1|a|G|389
9RBF|1|a|U|390
9RBF|1|a|A|391
9RBF|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

E-site tRNA

Chain w

Large ribosomal subunit protein bL28