HL_9RBF_067

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9RBF|1|a|U|1396, 9RBF|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RBF_067 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3484

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9RBF|1|a|G|1389
9RBF|1|a|U|1390
9RBF|1|a|U|1391
9RBF|1|a|A|1392
9RBF|1|a|A|1393
9RBF|1|a|U|1394
9RBF|1|a|A|1395
9RBF|1|a|U|1396
9RBF|1|a|U|1397
9RBF|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Protein translocase subunit SecY

Chain s

Large ribosomal subunit protein uL23