HL_9RFW_026

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

9RFW|1|a|5MU|747, 9RFW|1|a|A|751, 9RFW|1|a|A|752

QA status

Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|U|744
9RFW|1|a|1MG|745
9RFW|1|a|PSU|746
9RFW|1|a|5MU|747
9RFW|1|a|G|748
9RFW|1|a|A|749
9RFW|1|a|A|750
9RFW|1|a|A|751
9RFW|1|a|A|752
9RFW|1|a|A|753

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain d

Large ribosomal subunit protein uL3

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32