HL_9RG7_005

3D structure

PDB id

9RG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro reconstituted NAA40-NAC bound 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9RG7|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RG7_005 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.0808

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9RG7|1|L5|U|204
9RG7|1|L5|C|205
9RG7|1|L5|U|206
9RG7|1|L5|G|207
9RG7|1|L5|A|208
9RG7|1|L5|U|209
9RG7|1|L5|C|210
9RG7|1|L5|G|211

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32

Chain N4

N-alpha-acetyltransferase 40