HL_9RG7_067

3D structure

PDB id

9RG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro reconstituted NAA40-NAC bound 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RG7_067 not in the Motif Atlas

Homologous match to HL_8GLP_071

Geometric discrepancy: 0.0524

The information below is about HL_8GLP_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9RG7|1|L5|U|4646
9RG7|1|L5|G|4647
9RG7|1|L5|A|4648
9RG7|1|L5|G|4649
9RG7|1|L5|G|4650
9RG7|1|L5|A|4651

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Ld

60S ribosomal protein L31

Chain NB

Transcription factor BTF3