HL_9RJA_004

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9RJA|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RJA_004 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2554

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9RJA|1|A|G|259
9RJA|1|A|G|260
9RJA|1|A|U|261
9RJA|1|A|A|262
9RJA|1|A|A|263
9RJA|1|A|C|264
9RJA|1|A|G|265
9RJA|1|A|G|266
9RJA|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

30S ribosomal protein S20