HL_9RJA_006

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RJA_006 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.133

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9RJA|1|A|A|320
9RJA|1|A|A|321
9RJA|1|A|C|322
9RJA|1|A|U|323
9RJA|1|A|G|324
9RJA|1|A|A|325
9RJA|1|A|G|326
9RJA|1|A|A|327
9RJA|1|A|C|328
9RJA|1|A|A|329
9RJA|1|A|C|330
9RJA|1|A|G|331
9RJA|1|A|G|332
9RJA|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20