HL_9RJA_029
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RJA_029 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1082
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9RJA|1|Y|A|31
9RJA|1|Y|U|32
9RJA|1|Y|U|33
9RJA|1|Y|G|34
9RJA|1|Y|A|35
9RJA|1|Y|A|36
9RJA|1|Y|A|37
9RJA|1|Y|A|38
9RJA|1|Y|U|39
Current chains
- Chain Y
- A-site Phe-tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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