HL_9ROV_004

3D structure

PDB id

9ROV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ROV_004 not in the Motif Atlas

Geometric match to HL_4LFB_019

Geometric discrepancy: 0.1117

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9ROV|1|A|A|768
9ROV|1|A|G|769
9ROV|1|A|C|770
9ROV|1|A|A|771
9ROV|1|A|A|772
9ROV|1|A|U|773

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain L

28S ribosomal protein S15, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial