HL_9RPF_001

3D structure

PDB id

9RPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9RPF|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPF_001 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.2035

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9RPF|1|A|U|654
9RPF|1|A|U|655
9RPF|1|A|U|656
9RPF|1|A|G|657
9RPF|1|A|G|658
9RPF|1|A|U|659
9RPF|1|A|C|660
9RPF|1|A|C|661
9RPF|1|A|U|662
9RPF|1|A|A|663
9RPF|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial