HL_9RPV_003

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

9RPV|1|B4|C|55, 9RPV|1|B4|G|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_003 not in the Motif Atlas

Homologous match to HL_5B63_004

Geometric discrepancy: 0.3681

The information below is about HL_5B63_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9RPV|1|B4|G|52
9RPV|1|B4|A|53
9RPV|1|B4|U|54
9RPV|1|B4|C|55
9RPV|1|B4|G|56
9RPV|1|B4|A|57
9RPV|1|B4|A|58
9RPV|1|B4|A|59
9RPV|1|B4|C|60

Current chains

Chain B4

P/E tRNA on the collided 80S

Nearby chains