HL_9RPV_004
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CAGCCCGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9RPV|1|B5|G|19, 9RPV|1|B5|G|20, 9RPV|1|B5|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RPV_004 not in the Motif Atlas
- Homologous match to HL_7MRL_001
- Geometric discrepancy: 0.1385
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9RPV|1|B5|C|13
9RPV|1|B5|A|14
9RPV|1|B5|G|15
9RPV|1|B5|C|16
9RPV|1|B5|C|17
9RPV|1|B5|C|18
9RPV|1|B5|G|19
9RPV|1|B5|G|20
9RPV|1|B5|U|21
9RPV|1|B5|A|22
9RPV|1|B5|G|23
Current chains
- Chain B5
- P-site tRNA of the stalled 80S
Nearby chains
- Chain M5
- Large subunit ribosomal RNA; LSU rRNA
- Chain MJ
- 60S ribosomal protein L11
- Chain Mo
- Large ribosomal subunit protein eL42
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