HL_9RPV_006
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GU(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RPV_006 not in the Motif Atlas
- Homologous match to HL_4YCO_003
- Geometric discrepancy: 0.0857
- The information below is about HL_4YCO_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9RPV|1|B5|G|54
9RPV|1|B5|U|55
9RPV|1|B5|PSU|56
9RPV|1|B5|C|57
9RPV|1|B5|A|58
9RPV|1|B5|A|59
9RPV|1|B5|A|60
9RPV|1|B5|U|61
9RPV|1|B5|C|62
Current chains
- Chain B5
- P-site tRNA of the stalled 80S
Nearby chains
- Chain M5
- Large subunit ribosomal RNA; LSU rRNA
- Chain MJ
- 60S ribosomal protein L11
- Chain Mo
- Large ribosomal subunit protein eL42
Coloring options: