HL_9RPV_010

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUUCGACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_010 not in the Motif Atlas

Homologous match to HL_5J8B_110

Geometric discrepancy: 0.1817

The information below is about HL_5J8B_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9RPV|1|E5|G|52
9RPV|1|E5|U|53
9RPV|1|E5|U|54
9RPV|1|E5|C|55
9RPV|1|E5|G|56
9RPV|1|E5|A|57
9RPV|1|E5|C|58
9RPV|1|E5|U|59
9RPV|1|E5|C|60

Current chains

Chain E5

E-site tRNA of the stalled 80S

Nearby chains

Chain Ms

60S ribosomal protein L10a