HL_9RPV_015

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9RPV|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_015 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.083

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9RPV|1|L5|U|204
9RPV|1|L5|C|205
9RPV|1|L5|U|206
9RPV|1|L5|G|207
9RPV|1|L5|A|208
9RPV|1|L5|U|209
9RPV|1|L5|C|210
9RPV|1|L5|G|211

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32