HL_9RPV_022

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

9RPV|1|L5|C|1172, 9RPV|1|L5|G|1178, 9RPV|1|L5|U|1179, 9RPV|1|L5|C|1181, 9RPV|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|L5|G|1171
9RPV|1|L5|C|1172
9RPV|1|L5|G|1173
9RPV|1|L5|G|1174
9RPV|1|L5|A|1175
9RPV|1|L5|C|1176
9RPV|1|L5|U|1177
9RPV|1|L5|G|1178
9RPV|1|L5|U|1179
9RPV|1|L5|C|1180
9RPV|1|L5|C|1181
9RPV|1|L5|C|1182
9RPV|1|L5|C|1183
9RPV|1|L5|A|1184
9RPV|1|L5|G|1185
9RPV|1|L5|U|1186
9RPV|1|L5|G|1187
9RPV|1|L5|C|1188
9RPV|1|L5|G|1189
9RPV|1|L5|C|1190

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5