HL_9RPV_089

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

9RPV|1|M5|G|232, 9RPV|1|M5|U|233, 9RPV|1|M5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_089 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.1698

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9RPV|1|M5|G|230
9RPV|1|M5|U|231
9RPV|1|M5|G|232
9RPV|1|M5|U|233
9RPV|1|M5|G|234
9RPV|1|M5|A|235
9RPV|1|M5|G|236
9RPV|1|M5|G|237
9RPV|1|M5|C|238

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M8

5.8S ribosomal RNA; 5.8S rRNA

Chain MC

60S ribosomal protein L4

Chain MY

60S ribosomal protein L26