HL_9RPV_090

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9RPV|1|M5|G|294, 9RPV|1|M5|A|295, 9RPV|1|M5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_090 not in the Motif Atlas

Homologous match to HL_8GLP_008

Geometric discrepancy: 0.0946

The information below is about HL_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9RPV|1|M5|C|289
9RPV|1|M5|U|290
9RPV|1|M5|U|291
9RPV|1|M5|G|292
9RPV|1|M5|G|293
9RPV|1|M5|G|294
9RPV|1|M5|A|295
9RPV|1|M5|A|296
9RPV|1|M5|U|297
9RPV|1|M5|G|298

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ML

Large ribosomal subunit protein eL13

Chain MN

60S ribosomal protein L15

Chain Ma

Large ribosomal subunit protein uL15

Chain Mo

Large ribosomal subunit protein eL42