HL_9RPV_091

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9RPV|1|M5|G|315, 9RPV|1|M5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_091 not in the Motif Atlas

Homologous match to HL_8GLP_009

Geometric discrepancy: 0.0573

The information below is about HL_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9RPV|1|M5|G|314
9RPV|1|M5|G|315
9RPV|1|M5|U|316
9RPV|1|M5|A|317
9RPV|1|M5|A|318
9RPV|1|M5|A|319
9RPV|1|M5|C|320
9RPV|1|M5|U|321
9RPV|1|M5|C|322
9RPV|1|M5|C|323

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MN

60S ribosomal protein L15

Chain Ma

Large ribosomal subunit protein uL15

Chain Mi

60S ribosomal protein L36

Chain Mo

Large ribosomal subunit protein eL42