HL_9RPV_113

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

9RPV|1|M5|G|2421, 9RPV|1|M5|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|A|2420
9RPV|1|M5|G|2421
9RPV|1|M5|OMC|2422
9RPV|1|M5|A|2423
9RPV|1|M5|OMG|2424
9RPV|1|M5|U|2425
9RPV|1|M5|U|2426

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MP

60S ribosomal protein L17

Chain MR

60S ribosomal protein L19

Chain Ml

60S ribosomal protein L39