HL_9RPV_122

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

9RPV|1|M5|U|2707, 9RPV|1|M5|C|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_122 not in the Motif Atlas

Homologous match to HL_8GLP_043

Geometric discrepancy: 0.1023

The information below is about HL_8GLP_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.5

Basepair signature

cWW-F-F

Number of instances in this motif group

21

Unit IDs

9RPV|1|M5|G|2705
9RPV|1|M5|G|2706
9RPV|1|M5|U|2707
9RPV|1|M5|U|2708
9RPV|1|M5|C|2709
9RPV|1|M5|C|2710

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MR

60S ribosomal protein L19

Chain MX

60S ribosomal protein L23a