HL_9RPV_130

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(A2M)GAAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_130 not in the Motif Atlas

Homologous match to HL_9PN5_046

Geometric discrepancy: 0.0854

The information below is about HL_9PN5_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RPV|1|M5|A2M|3724
9RPV|1|M5|G|3725
9RPV|1|M5|A|3726
9RPV|1|M5|A|3727
9RPV|1|M5|A|3728
9RPV|1|M5|PSU|3729

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain Mi

60S ribosomal protein L36

Chain Mo

Large ribosomal subunit protein eL42

Chain Ms

60S ribosomal protein L10a