HL_9RPV_134
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- AGCCCCGAGGGGCU
- Length
- 14 nucleotides
- Bulged bases
- 9RPV|1|M5|G|4104, 9RPV|1|M5|A|4105, 9RPV|1|M5|G|4106
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RPV_134 not in the Motif Atlas
- Homologous match to HL_8GLP_057
- Geometric discrepancy: 0.2342
- The information below is about HL_8GLP_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.4
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9RPV|1|M5|A|4098
9RPV|1|M5|G|4099
9RPV|1|M5|C|4100
9RPV|1|M5|C|4101
9RPV|1|M5|C|4102
9RPV|1|M5|C|4103
9RPV|1|M5|G|4104
9RPV|1|M5|A|4105
9RPV|1|M5|G|4106
9RPV|1|M5|G|4107
9RPV|1|M5|G|4108
9RPV|1|M5|G|4109
9RPV|1|M5|C|4110
9RPV|1|M5|U|4111
Current chains
- Chain M5
- 28S rRNA of the stalled 80S
Nearby chains
- Chain Mg
- 60S ribosomal protein L34
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
Coloring options: