HL_9RPV_134

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

9RPV|1|M5|G|4104, 9RPV|1|M5|A|4105, 9RPV|1|M5|G|4106

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|A|4098
9RPV|1|M5|G|4099
9RPV|1|M5|C|4100
9RPV|1|M5|C|4101
9RPV|1|M5|C|4102
9RPV|1|M5|C|4103
9RPV|1|M5|G|4104
9RPV|1|M5|A|4105
9RPV|1|M5|G|4106
9RPV|1|M5|G|4107
9RPV|1|M5|G|4108
9RPV|1|M5|G|4109
9RPV|1|M5|C|4110
9RPV|1|M5|U|4111

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain Mg

60S ribosomal protein L34

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SE

Small ribosomal subunit protein eS4, X isoform