HL_9RPV_137

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9RPV|1|M5|A|4214, 9RPV|1|M5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|U|4210
9RPV|1|M5|C|4211
9RPV|1|M5|A|4212
9RPV|1|M5|A|4213
9RPV|1|M5|A|4214
9RPV|1|M5|C|4215
9RPV|1|M5|G|4216
9RPV|1|M5|G|4217
9RPV|1|M5|U|4218
9RPV|1|M5|A|4219
9RPV|1|M5|6MZ|4220
9RPV|1|M5|C|4221
9RPV|1|M5|G|4222

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MI

60S ribosomal protein L10

Chain MT

60S ribosomal protein L21

Chain Mb

Large ribosomal subunit protein eL29