HL_9RPV_143

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_143 not in the Motif Atlas

Homologous match to HL_9H3G_062

Geometric discrepancy: 0.1228

The information below is about HL_9H3G_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9RPV|1|M5|C|4417
9RPV|1|M5|G|4418
9RPV|1|M5|U|4419
9RPV|1|M5|PSU|4420
9RPV|1|M5|C|4421
9RPV|1|M5|A|4422
9RPV|1|M5|PSU|4423
9RPV|1|M5|A|4424
9RPV|1|M5|G|4425

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MI

60S ribosomal protein L10

Chain Mm

Ubiquitin-ribosomal protein eL40 fusion protein