HL_9RPV_148

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_148 not in the Motif Atlas

Homologous match to HL_8GLP_071

Geometric discrepancy: 0.0568

The information below is about HL_8GLP_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9RPV|1|M5|U|4646
9RPV|1|M5|G|4647
9RPV|1|M5|A|4648
9RPV|1|M5|G|4649
9RPV|1|M5|G|4650
9RPV|1|M5|A|4651

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MR

60S ribosomal protein L19

Chain MU

60S ribosomal protein L22

Chain Md

60S ribosomal protein L31