HL_9RPV_149

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9RPV|1|M5|G|4694, 9RPV|1|M5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|4688
9RPV|1|M5|PSU|4689
9RPV|1|M5|G|4690
9RPV|1|M5|A|4691
9RPV|1|M5|A|4692
9RPV|1|M5|C|4693
9RPV|1|M5|G|4694
9RPV|1|M5|C|4695
9RPV|1|M5|C|4696
9RPV|1|M5|U|4697
9RPV|1|M5|C|4698
9RPV|1|M5|U|4699
9RPV|1|M5|A|4700
9RPV|1|M5|A|4701
9RPV|1|M5|G|4702

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MH

60S ribosomal protein L9

Chain MO

60S ribosomal protein L13a

Chain Mm

Ubiquitin-ribosomal protein eL40 fusion protein