HL_9RPV_151

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9RPV|1|M5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_151 not in the Motif Atlas

Homologous match to HL_8GLP_075

Geometric discrepancy: 0.0543

The information below is about HL_8GLP_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.4

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9RPV|1|M5|G|4975
9RPV|1|M5|U|4976
9RPV|1|M5|A|4977
9RPV|1|M5|G|4978
9RPV|1|M5|A|4979
9RPV|1|M5|C|4980
9RPV|1|M5|G|4981
9RPV|1|M5|A|4982
9RPV|1|M5|C|4983

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MP

60S ribosomal protein L17