HL_9RPV_158

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

9RPV|1|M8|U|123, 9RPV|1|M8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_158 not in the Motif Atlas

Homologous match to HL_8GLP_081

Geometric discrepancy: 0.1652

The information below is about HL_8GLP_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RPV|1|M8|G|122
9RPV|1|M8|U|123
9RPV|1|M8|U|124
9RPV|1|M8|C|125
9RPV|1|M8|C|126
9RPV|1|M8|U|127
9RPV|1|M8|C|128

Current chains

Chain M8

5.8S rRNA of the stalled 80S

Nearby chains

Chain M5

Large subunit ribosomal RNA; LSU rRNA

Chain MX

60S ribosomal protein L23a