HL_9RPV_171

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUCGAUGCUCUUAGCUGAGUGUCCCGCG

Length

29 nucleotides

Bulged bases

9RPV|1|S2|C|759, 9RPV|1|S2|U|760, 9RPV|1|S2|C|761, 9RPV|1|S2|G|762, 9RPV|1|S2|A|763, 9RPV|1|S2|U|764, 9RPV|1|S2|G|765, 9RPV|1|S2|C|766, 9RPV|1|S2|U|767, 9RPV|1|S2|C|768, 9RPV|1|S2|U|769, 9RPV|1|S2|U|770, 9RPV|1|S2|A|771, 9RPV|1|S2|G|772, 9RPV|1|S2|C|773, 9RPV|1|S2|U|774, 9RPV|1|S2|G|775, 9RPV|1|S2|A|776, 9RPV|1|S2|G|777, 9RPV|1|S2|U|778, 9RPV|1|S2|G|779, 9RPV|1|S2|U|780, 9RPV|1|S2|C|781, 9RPV|1|S2|C|782, 9RPV|1|S2|C|783, 9RPV|1|S2|G|784, 9RPV|1|S2|C|785

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|S2|C|758
9RPV|1|S2|C|759
9RPV|1|S2|U|760
9RPV|1|S2|C|761
9RPV|1|S2|G|762
9RPV|1|S2|A|763
9RPV|1|S2|U|764
9RPV|1|S2|G|765
9RPV|1|S2|C|766
9RPV|1|S2|U|767
9RPV|1|S2|C|768
9RPV|1|S2|U|769
9RPV|1|S2|U|770
9RPV|1|S2|A|771
9RPV|1|S2|G|772
9RPV|1|S2|C|773
9RPV|1|S2|U|774
9RPV|1|S2|G|775
9RPV|1|S2|A|776
9RPV|1|S2|G|777
9RPV|1|S2|U|778
9RPV|1|S2|G|779
9RPV|1|S2|U|780
9RPV|1|S2|C|781
9RPV|1|S2|C|782
9RPV|1|S2|C|783
9RPV|1|S2|G|784
9RPV|1|S2|C|785
9RPV|1|S2|G|786

Current chains

Chain S2

18S rRNA of the collided 80S

Nearby chains