HL_9RPV_192

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

9RPV|1|S3|C|199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_192 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.3832

The information below is about HL_4WF9_004

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9RPV|1|S3|C|196
9RPV|1|S3|U|197
9RPV|1|S3|U|198
9RPV|1|S3|C|199
9RPV|1|S3|G|200
9RPV|1|S3|C|201
9RPV|1|S3|G|202
9RPV|1|S3|G|203

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RI

40S ribosomal protein S8