HL_9RPV_208

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

9RPV|1|S3|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|S3|G|1054
9RPV|1|S3|A|1055
9RPV|1|S3|PSU|1056
9RPV|1|S3|C|1057
9RPV|1|S3|A|1058
9RPV|1|S3|G|1059
9RPV|1|S3|A|1060
9RPV|1|S3|U|1061
9RPV|1|S3|A|1062
9RPV|1|S3|C|1063
9RPV|1|S3|C|1064

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain A5

mRNA of the stalled 80S

Chain B5

Transfer RNA; tRNA

Chain M5

Large subunit ribosomal RNA; LSU rRNA

Chain RO

40S ribosomal protein S14

Chain Ra

40S ribosomal protein S26