HL_9RPV_216

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

9RPV|1|S3|G|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_216 not in the Motif Atlas

Geometric match to HL_8GLP_112

Geometric discrepancy: 0.1554

The information below is about HL_8GLP_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36488.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9RPV|1|S3|C|1417
9RPV|1|S3|C|1418
9RPV|1|S3|C|1419
9RPV|1|S3|G|1420
9RPV|1|S3|A|1421
9RPV|1|S3|G|1422

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RT

40S ribosomal protein S19