HL_9RPV_218

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_218 not in the Motif Atlas

Homologous match to HL_9H3G_105

Geometric discrepancy: 0.2816

The information below is about HL_9H3G_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9RPV|1|S3|C|1565
9RPV|1|S3|G|1566
9RPV|1|S3|G|1567
9RPV|1|S3|C|1568
9RPV|1|S3|A|1569
9RPV|1|S3|G|1570

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RP

40S ribosomal protein S15

Chain RS

40S ribosomal protein S18

Chain RT

40S ribosomal protein S19