HL_9RTU_054

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RTU_054 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.1167

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9RTU|1|A|G|2304
9RTU|1|A|U|2305
9RTU|1|A|C|2306
9RTU|1|A|G|2307
9RTU|1|A|G|2308
9RTU|1|A|A|2309
9RTU|1|A|C|2310
9RTU|1|A|A|2311
9RTU|1|A|U|2312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5